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The data set contains the transcript annotations for the assembled IDT3 transcriptome. The trinotate annotation file provides an assembled transcript ID, gene name, how the gene was identified (the trinotate pipeline contains several methods of gene identification), and gene ontology information. The accompanying BAM alignment files contain the read mapping data for transcriptome samples used in the differential gene expression experiment. Raw read, BAM alignment and assembled IDT3 transcriptome data files are available from the NCBI SRA database as part of BioProject PRJNA934360.
Data Use:
License: CC0
Recommended Citation: Melton AE, Moran K, Martinez P, Ellestad P, Milliken E, Morales W, Child AW, Richardson BA, Serpe M, Novak SJ, Buerki S. 2023. Annotations from: Artemisia tridentata IDT3 RNASeq transcriptome BioProject PRJNA934360 (Version 0.1) [Data set]. University of Idaho. https://doi.org/10.7923/h898-2606
Ancillary Data: NCBI BioProject PRJNA934360
Funding
US National Science Foundation and Idaho EPSCoR: OIA-1757324
Dovetail Genomics: Tree of Life Award
Data and Resources
| Field | Value |
|---|---|
| Modified | 2023-07-24 |
| Release Date | 2023-02-17 |
| Publisher | |
| Identifier | a7147934-4ec0-4ad5-b28b-1fe8a3f75738 |
| Spatial / Geographical Coverage Area | POINT (-116.9641 43.3366) POINT (-109.3876 38.306) POLYGON ((-116.9641 38.306, -116.9641 43.3366, -109.3876 43.3366, -109.3876 38.306)) |
| Spatial / Geographical Coverage Location | Sagebrush steppe ecosystems in Idaho and Utah USA |
| Temporal Coverage | Wednesday, July 10, 2019 - 00:00 to Saturday, December 31, 2022 - 00:00 |
| Language | English (United States) |
| License | |
| Author | |
| Contact Name | Sven Buerki |
| Contact Email | |
| Public Access Level | Public |
| DOI | 10.7923/h898-2606 |