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A haploid pseudo-chromosome genome assembly for a keystone sagebrush species (Artemisia tridentata) of western North American rangelands

Pseudo-chromosome level reference genome assembly for Artemisia tridentata. Sequence data for Artemisia tridentata to support the following Genome Report published in G3

All sequence data for this project are available from the National Center for Biotechnology Information (NCBI) under BioProject accession number PRJNA795150 and BioSample accession number SAMN24662005. The Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession JAKJXK000000000. All raw sequence files are available from the NCBI SRA database (PacBio long read data SRR17863255 Omni-C proximity-ligation data SRR17863200, SRR17870744 and SRR17870745; Illumina HiSeq short read data SRR17870775 and SRR17863368; RNASeq paired end reads from leaf tissue SRR17779362; RNASeq paired end reads from root tissue SRR17779361).

Genome annotation results and supporting data files are openly available via the G3 Figshare repository at https://doi.org/10.25387/g3.19651260.v1. All software used in this work is in the public domain, with parameters being clearly described in Methods section of the associated Genome Report. If parameters were not detailed for a software, default parameters were used as suggested by the developer.

Data Use
License
Creative Commons Public Domain Dedication and Certification (CC-PDDC)
Recommended Citation
Melton AE, Child AW, Dumaguit CDC, Forbey JS, Germino M, de Graaf M, Kliskey A, Martinez P, Novak SJ, Richardson BA, Serpe M, Buerki S. 2022. A haploid pseudo-chromosome genome assembly for a keystone sagebrush species (Artemisia tridentata) of western North American rangelands [Dataset]. National Center for Biotechnology Information. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA795150

Funding
US National Science Foundation and Idaho EPSCoR: OIA-1757324

FieldValue
Modified
2023-08-30
Release Date
2022-05-26
Publisher
Identifier
e1e45a9e-75ec-4200-abba-aa2239cd1e9f
Spatial / Geographical Coverage Area
POINT (-116.9641 43.3366)
Spatial / Geographical Coverage Location
IDT3 southwest Idaho USA
Temporal Coverage
Wednesday, January 1, 2020 - 00:00 to Monday, February 28, 2022 - 00:00
Language
English (United States)
License
Creative Commons Public Domain Dedication and Certification
Author
Anthony E. Melton, Andrew W. Child, Carlos Dave C. Dumaguit, Jennifer S. Forbey, Matthew Germino, Marie-Anne de Graaf, Andrew Kliskey, Peggy Martinez, Stephen J. Novak, Bryce A. Richardson, Marcelo Serpe, Sven Buerki
Contact Name
Sven Buerki
Contact Email
Public Access Level
Public
Data available on:: 
Tuesday, May 17, 2022