{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"a40a817d-4f94-4f2b-82a2-942e40aa600f","name":"gem3-genomics-workflow","title":"GEM3: Genomics Workflow","author":"Morgan Calahan and Miranda Striluk","author_email":"morgancalahan@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","license_title":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/","notes":"\u003Cp\u003E1 Vision Statement\u003Cbr \/\u003E\nThis genomics workflow was created by Idaho EPSCoR GEM3 participants and attendees of the 2023 Smithsonian School of Conservation Bioinformatics Analysis of Conservation Genomics Workshop with George Mason University through support of GEM3. The purpose of this workflow module is to share what was learned in this workshop and build capacity in conservation genomics and bioinformatics.\u003C\/p\u003E\n\u003Cp\u003E2 What Will Be Covered?\u003Cbr \/\u003E\nPlease follow this workflow to learn about how to process raw genomic resequencing data, as well as downstream analysis options. Further downstream analyses are captured in the following repository: GEM3Genomics\/Genomics_Downstream_Analyses.\u003C\/p\u003E\n\u003Cp\u003EDisclaimer: This workflow was developed in March 2023 with bioinformatic and genomic research recommendations at that time. Please note that program versions and recommendations will likely change with time due to the nature of this quickly evolving field.\u003C\/p\u003E\n\u003Cp\u003E3 What Is Required?\u003Cbr \/\u003E\nYou will need access to an High Performance Computing (HPC) machine, as well as R for downstream analyses. Knowledge of job script format, how to submit jobs, and how to compute in an interactive node specific to your institution\u2019s HPC will also be necessary.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EWorkflow Reuse\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E\u003Cbr \/\u003E\n\u003Ca href=\u0022https:\/\/creativecommons.org\/licenses\/by\/4.0\/\u0022\u003ECC-BY 4.0\u003C\/a\u003E\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nCalahan, M., \u0026amp; Striluk, M. (2023). GEM3: Genomics Workflow. GitHub. \u003Ca href=\u0022https:\/\/doi.org\/10.7923\/BJE3-Q230\u0022\u003Ehttps:\/\/doi.org\/10.7923\/BJE3-Q230\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1757324\u0022\u003EOIA-1757324\u003C\/a\u003E\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/gem3-genomics-workflow","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Tue, 08\/08\/2023 - 15:27","metadata_created":"Tue, 08\/08\/2023 - 15:23","metadata_modified":"Tue, 08\/08\/2023 - 15:27","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"1dc30658-4bdc-43a6-96df-e7c4bd0fd222","revision_id":"","url":"https:\/\/gem3genomics.github.io\/Genomics_Workflow.github.io\/index.html","description":"","format":"html","state":"Active","revision_timestamp":"Tue, 08\/08\/2023 - 15:25","name":"Workflow Access via GitHub | GEM3: Genomics Workflow","mimetype":"html","size":"","created":"Tue, 08\/08\/2023 - 15:25","resource_group_id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","last_modified":"Date changed Tue, 08\/08\/2023 - 15:25"},{"id":"736e0af3-4584-477e-aa42-0e2c5fa56745","revision_id":"","url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bje3-q230.xml","description":"","format":"xml","state":"Active","revision_timestamp":"Tue, 08\/08\/2023 - 15:26","name":"Metadata Access | GEM3: Genomics Workflow (DataCite xml)","mimetype":"text\/xml","size":"5.45 KB","created":"Tue, 08\/08\/2023 - 15:26","resource_group_id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","last_modified":"Date changed Tue, 08\/08\/2023 - 15:26"}],"tags":[{"id":"9d10045c-9469-4162-99d1-4a4bf8a3c1f0","vocabulary_id":"2","name":"genomics"},{"id":"894c23dc-0fe9-49c8-841c-051424e70b40","vocabulary_id":"2","name":"bioinformatics"},{"id":"4521c8b1-8a33-4c79-bf87-0cfb353e7b8f","vocabulary_id":"2","name":"workflow"},{"id":"c3e93073-9864-48d1-bf64-07484bdab9d0","vocabulary_id":"2","name":"high performance computing"}],"groups":[{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]} Error | RCDS Data Repository

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