{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"7d957cb2-7eff-4416-8f09-b2ccfc4f720b","name":"unifying-community-detection-across-scales-genomes-landscapes","title":"Unifying community detection across scales from genomes to landscapes","author":"Andrii Zaiats, Stephanie F. Hudon, Anna Roser, Anand Roopsind, Cristina Barber, Brecken C. Robb, Britt A. Pendleton, Meghan J. Camp, Patrick E. Clark, Merry M. Davidson, Jonas Frankel-Bricker, Marcella Fremgen-Tarantino, Jennifer Sorensen Forbey, et al.","author_email":"trevorcaughlin@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","license_title":"https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/","notes":"\u003Cp\u003EBiodiversity science encompasses multiple disciplines and biological scales from molecules to landscapes. Nevertheless, biodiversity data are often analyzed separately with discipline-specific methodologies, constraining resulting inferences to a single scale. To overcome this, we present a topic modeling framework to analyze community composition in cross-disciplinary datasets, including those generated from metagenomics, metabolomics, field ecology, and remote sensing. Using topic models, we demonstrate how community detection in different datasets can inform the conservation of interacting plants and herbivores. We show how topic models can identify members of molecular, organismal, and landscape-level communities that relate to wildlife health, from gut microbes to forage quality. We conclude with a future vision for how topic modeling can be used to design cross-scale studies that promote a holistic approach to detect, monitor, and manage biodiversity.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EData Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E\u003Cbr \/\u003E\n\u003Ca href=\u0022https:\/\/creativecommons.org\/publicdomain\/zero\/1.0\/\u0022\u003ECC0-1.0\u003C\/a\u003E\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nZaiats A, Hudson S, Roser A, Roosind A, Barber C, Robb BC, Pendleton BA, Camp MJ, Clark PE, Davidson MM, Frankel-Bricker J, Fremgen-Tarantino M, Forbey JS, Hayden EJ, Richards LA, Rodrigues OK, Caughlin TT. 2021. Unifying community detection across scales from genomes to landscapes [Dataset]. Dryad. \u003Ca href=\u0022https:\/\/doi.org\/10.5061\/dryad.8w9ghx3mf\u0022\u003Ehttps:\/\/doi.org\/10.5061\/dryad.8w9ghx3mf\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nNational Aeronautics and Space Administration: 80NSCCC17K0738\u003Cbr \/\u003E\nIdaho State Board of Education: IGEM19-002\u003Cbr \/\u003E\nSemiconductor Research Corporation: SRC 2018-SB-2842\u003Cbr \/\u003E\nIdaho Department of Fish and Game: Pittman-Robertson 683 Funds\u003Cbr \/\u003E\nSigma Xi Grants-In-Aid\u003Cbr \/\u003E\nUS Bureau of Land Management: L09AC16253\u003Cbr \/\u003E\nUS National Science Foundation: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1258217\u0022\u003EIOS-1258217\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1146194\u0022\u003EDEB-1146194\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1146368\u0022\u003EDEB-1146368\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1826801\u0022\u003EOIA-1826801\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1757324\u0022\u003EOIA-1757324\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1738865\u0022\u003EOIA-1738865\u003C\/a\u003E\u003Cbr \/\u003E\nUS National Science Foundation: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1807809\u0022\u003EECCS-1807809\u003C\/a\u003E\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/unifying-community-detection-across-scales-genomes-landscapes","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Thu, 08\/17\/2023 - 10:40","metadata_created":"Thu, 03\/03\/2022 - 11:41","metadata_modified":"Thu, 08\/17\/2023 - 10:40","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"375d3bc3-ce9f-498b-b190-a5c5a1b49135","revision_id":"","url":"https:\/\/doi.org\/10.5061\/dryad.8w9ghx3mf","description":"","format":"html","state":"Active","revision_timestamp":"Wed, 08\/16\/2023 - 15:30","name":"Data Access via Dryad | Unifying community detection across scales from genomes to landscapes","mimetype":"html","size":"","created":"Thu, 03\/03\/2022 - 11:42","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Wed, 08\/16\/2023 - 15:30"}],"tags":[{"id":"bfd62175-0785-4c6b-ad66-b98ab6501123","vocabulary_id":"2","name":"Artemisia tridentata (sagebrush)"},{"id":"95654bc0-02f9-4101-b672-5325dfa327c0","vocabulary_id":"2","name":"biodiversity"},{"id":"425f965a-f839-486d-be20-95827298c8c0","vocabulary_id":"2","name":"ecology"},{"id":"c57b6327-705e-4431-b293-6b751290e656","vocabulary_id":"2","name":"landscape"},{"id":"485476f9-572a-472d-a3fa-b20d137fe973","vocabulary_id":"2","name":"microbiome"},{"id":"385f043c-10c3-4661-ac92-92b7bab3ce17","vocabulary_id":"2","name":"remote sensing"},{"id":"1ba1d524-4100-4d51-9bb0-c3c3d6500af8","vocabulary_id":"2","name":"Latent Dirichlet Allocation"},{"id":"c04aa701-a5ca-4b01-b049-c47cc3308e57","vocabulary_id":"2","name":"metabolomics"},{"id":"27ca374e-bcbe-4fc9-b8db-882df296525a","vocabulary_id":"2","name":"metagenomics"},{"id":"d1a1d8a9-368b-4461-b3f5-641194d2fcbc","vocabulary_id":"2","name":"wildlife conservation"},{"id":"15630280-92f9-415b-967a-1a7440d4fd2f","vocabulary_id":"2","name":"unoccupied aerial systems (UAS)"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates.  Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity.  \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]}<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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