{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"62902913-d123-4502-a24a-46a3fb12d60c","name":"code-global-composition-bacteriophage-community-honeybees","title":"Code from: Global composition of the bacteriophage community in honeybees","author":"James T. Van Leuven","author_email":"jvanleuven@uidaho.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","notes":"\u003Cp\u003ECode from: Global composition of the bacteriophage community in honeybees \u003Ca href=\u0022https:\/\/doi.org\/10.1128\/msystems.01195-21\u0022\u003Ehttps:\/\/doi.org\/10.1128\/msystems.01195-21\u003C\/a\u003E. The R code for all analyses is available in the GitHub repository at \u003Ca href=\u0022https:\/\/github.com\/jtvanleuven\/bee_phage\u0022\u003Ehttps:\/\/github.com\/jtvanleuven\/bee_phage\u003C\/a\u003E.\u003C\/p\u003E\n\u003Cp\u003EThe microbial communities in animal digestive systems are critical to host development and health. These assemblages of primarily viruses, bacteria, and fungi stimulate the immune system during development, synthesize important chemical compounds like hormones, aid in digestion, competitively exclude pathogens, etc. The bacteriophages in animal microbiomes are harder to characterize than the bacterial or fungal components of the microbiome and thus we know comparatively little about the temporal and spatial dynamics of bacteriophage communities in animal digestive systems. Recently, the bacteriophages of the honeybee gut were characterized in two European bee populations. Most of the bacteriophages described in these two reports were novel, encoded many metabolic genes in their genomes, and had a community structure that suggests coevolution with their bacterial hosts. To describe the conservation of bacteriophages in bees and begin to understand their role in the bee microbiome, we sequenced the virome of Apis mellifera from Austin, Texas and compared bacteriophage composition between three locations around the world. We found that the majority of bacteriophages from Austin are novel, sharing no sequence similarity to anything in public repositories. However, many bacteriophages are shared among the three bee viromes, indicating specialization of bacteriophages in the bee gut. Our study along with the two previous bee virome studies shows that the bee gut bacteriophage community is simple compared to that of many animals, consisting of several hundred types of bacteriophages that primarily infect four of the dominant bacterial phylotypes in the bee gut.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003ECode Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nVan Leuven JT. 2022. Code from: Global composition of the bacteriophage community in honeybees [Code Repository bee_phage]. GitHub. \u003Ca href=\u0022https:\/\/github.com\/jtvanleuven\/bee_phage\u0022\u003Ehttps:\/\/github.com\/jtvanleuven\/bee_phage\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003EFunding\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: OIA-1757324\u003Cbr \/\u003E\nNational Institute of General Medical Sciences: P20 GM104420\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/code-global-composition-bacteriophage-community-honeybees","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Tue, 08\/29\/2023 - 16:14","metadata_created":"Tue, 08\/29\/2023 - 15:53","metadata_modified":"Tue, 08\/29\/2023 - 16:14","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"ba21a17b-db58-460b-88b5-ed5824a7f615","revision_id":"","url":"https:\/\/github.com\/jtvanleuven\/bee_phage","description":"","format":"html","state":"Active","revision_timestamp":"Tue, 08\/29\/2023 - 16:14","name":"Code Access via GitHub | Code from: Global composition of the bacteriophage community in honeybees (bee_phage)","mimetype":"html","size":"","created":"Tue, 08\/29\/2023 - 16:08","resource_group_id":"89a02fc8-c98e-44bb-9d3e-2d3d0849fbca","last_modified":"Date changed Tue, 08\/29\/2023 - 16:14"}],"tags":[{"id":"5f859265-7d19-47f5-a15e-0e22846d565a","vocabulary_id":"2","name":"adaptation"},{"id":"485476f9-572a-472d-a3fa-b20d137fe973","vocabulary_id":"2","name":"microbiome"},{"id":"435edef7-8f56-48e1-851a-1231e1537ef4","vocabulary_id":"2","name":"wildlife"},{"id":"be413b5c-8e11-477f-92e4-bd49a4e76396","vocabulary_id":"2","name":"honeybees (Apis mellifera)"},{"id":"4a1958a9-1bac-4ee4-bfea-7ce4a8b8f216","vocabulary_id":"2","name":"bacteriophage"}],"groups":[{"description":"\u003Cp\u003ESince 1889, the University of Idaho has provided motivated students with a transformative higher education experience that prepares them to solve real-world problems and achieve success in their lives and careers.\u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.uidaho.edu\u0022\u003Ehttps:\/\/www.uidaho.edu\u003C\/a\u003E\u003C\/p\u003E\n","id":"89a02fc8-c98e-44bb-9d3e-2d3d0849fbca","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/UI_Main_horizontal_4c.jpg","title":"University of Idaho","name":"group\/university-idaho"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]} Error | RCDS Data Repository

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