{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"56161817-6978-4be1-9774-896d688b1aca","name":"meta-analysis-reveals-challenges-and-gaps-genome-phenome-research-underpinning-plant-drought","title":"Meta-analysis reveals challenges and gaps for genome-to-phenome research underpinning plant drought response","author":"Anthony E. Melton, Stephanie J. Galla, Carlos Dave C. Dumaguit, John M. A. Wojahn, Stephen Novak, Marcelo Serpe, Peggy Martinez \u0026amp; Sven Buerki ","author_email":"anthonymelton@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","license_title":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/","notes":"\u003Cp\u003EData used to identify species occurring in hyperarid environments for analyses described in \u0022Meta-analysis reveals challenges and gaps for genome-to-phenome research underpinning plant drought response.\u0022 The \u0022PlantsLackingHumanUse_PrelimQCd_Data.csv\u0022 contains data for all plants queried, while \u0022HyperArid_Occurrences.csv\u0022 contains the subset of data corresponding to plants occurring in hyperarid environments.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EAssociated Manuscript Abstract\u003C\/strong\u003E\u003Cbr \/\u003E\nSevere drought conditions and extreme weather events are increasing worldwide with climate change, threatening the persistence of native plant communities and ecosystems. Many studies have investigated the genomic basis of plant responses to drought. However, the extent of this research throughout the plant kingdom is unclear, particularly among species critical for the sustainability of natural ecosystems. This study aimed to broaden our understanding of genome-to-phenome (G2P) connections in drought-stressed plants and identify focal taxa for future research. Bioinformatics pipelines were developed to mine and link information from databases and abstracts from 7730 publications. This approach identified 1634 genes involved in drought responses among 497 plant taxa. Most (83.30%) of these species have been classified for human use, and most G2P interactions have been described within model organisms or crop species. Our analysis identifies several gaps in G2P research literature and database connectivity, with 21% of abstracts being linked to gene and taxonomy data in NCBI. Abstract text mining was more successful at identifying potential G2P pathways, with 34% of abstracts containing gene, taxa, and phenotype information. Expanding G2P studies to include non-model plants, especially those that are adapted to drought stress, will help advance our understanding of drought responsive G2P pathways.\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EData Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E\u003Cbr \/\u003E\nCreative Commons Attribution 4.0 International (\u003Ca href=\u0022https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode\u0022\u003ECC-BY 4.0\u003C\/a\u003E)\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nMelton AE, Galla SJ, Dumaguit CDC, Wojahn JMA, Novak S, Serpe M, Martinez P, Buerki S. 2022. Meta-analysis reveals challenges and gaps for genome-to-phenome research underpinning plant drought response (Version 1.0) [Dataset]. Zenodo. \u003Ca href=\u0022https:\/\/doi.org\/10.5281\/zenodo.7153278\u0022\u003Ehttps:\/\/doi.org\/10.5281\/zenodo.7153278\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: OIA-1757324\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/meta-analysis-reveals-challenges-and-gaps-genome-phenome-research-underpinning-plant-drought","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Wed, 09\/06\/2023 - 14:54","metadata_created":"Wed, 04\/26\/2023 - 14:23","metadata_modified":"Wed, 09\/06\/2023 - 14:54","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"03a68629-6122-4909-bb74-cdc9b5cf8b62","revision_id":"","url":"https:\/\/doi.org\/10.5281\/zenodo.7153278","description":"","format":"html","state":"Active","revision_timestamp":"Wed, 04\/26\/2023 - 14:30","name":"Data Access via Zenodo | Meta-analysis reveals challenges and gaps for genome-to-phenome research underpinning plant drought response","mimetype":"html","size":"","created":"Wed, 04\/26\/2023 - 14:24","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed Wed, 04\/26\/2023 - 14:30"}],"tags":[{"id":"f209da75-55f2-4169-a7c3-639e14cab1c1","vocabulary_id":"2","name":"arid habitats"},{"id":"3c4b7b04-c8c8-46c4-bc38-4a5ad5c6e57a","vocabulary_id":"2","name":"climate change"},{"id":"676cf28f-3517-4dc4-9c17-96b2cd742531","vocabulary_id":"2","name":"drought stress"},{"id":"f95708f9-2ef2-4e61-a9ef-bea10a6e75f2","vocabulary_id":"2","name":"green plants"},{"id":"5ae05940-dfb2-465d-b0c6-80250a5613c9","vocabulary_id":"2","name":"genome to phenome"},{"id":"3644076b-6e64-4336-839b-189629e71485","vocabulary_id":"2","name":"text mining"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates. Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity. \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]} Error | RCDS Data Repository

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