{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"4dd56ea6-1912-4159-9937-1a07b097bae3","name":"g2pminer","title":"G2PMineR","author":"John Michael Adrian Wojahn and Sven Buerki","author_email":"mikewojahn@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","notes":"\u003Cp\u003Ev0.1.0 release of the G2PMineR Package as described in Genes manuscript \u0022G2PMineR: A Genome to Phenome Literature Review Approach\u0022 (Wojahn et al., 2021). For further information and details about the package release visit the \u003Ca href=\u0022https:\/\/buerkilabteam.github.io\/G2PMineR_Web\/index.html\u0022\u003EG2PMineR Project Webpage\u003C\/a\u003E.\u003C\/p\u003E\n\u003Cp\u003EThere is a gap in the conceptual framework linking genes to phenotypes (G2P) for non-model organisms, as most non-model organisms do not yet have genomic resources readily available. To address this, researchers often perform literature reviews to understand G2P linkages by curating a list of likely gene candidates, hinging upon other studies already conducted in closely related systems. Sifting through hundreds to thousands of articles is a cumbersome task that slows down the scientific process and may introduce bias into a study. To fill this gap, we created G2PMineR, a free and open-source literature mining tool developed specifically for G2P research. This package uses automation to make the G2P review process efficient and unbiased, while also generating hypothesized associations between genes and phenotypes within a taxonomical framework. We applied the package to a literature review for drought-tolerance in plants. The analysis provides biologically meaningful the results within the known framework of drought tolerance in plants. Overall, the package is useful for conducting literature reviews for genome-to-phenome projects and also has broad appeal to scientists investigating a wide range of study systems as it can conduct analyses under the auspices of three different kingdoms (Plantae, Animalia, and Fungi).\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EData Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E\u003Cbr \/\u003E\nGNU Affero General Public License \u003Ca href=\u0022https:\/\/www.gnu.org\/licenses\/agpl.txt\u0022\u003Ev3.0\u003C\/a\u003E\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E\u003Cbr \/\u003E\nWojahn JMA, Buerki S. 2021. G2PMineR (Version 0.1.0). GitHub. \u003Ca href=\u0022https:\/\/doi.org\/10.7923\/41FB-MC86\u0022\u003Ehttps:\/\/doi.org\/10.7923\/41FB-MC86\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: OIA-1757324\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/g2pminer","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Thu, 08\/31\/2023 - 13:28","metadata_created":"Wed, 03\/02\/2022 - 14:43","metadata_modified":"Thu, 08\/31\/2023 - 13:28","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"78a365ed-236f-4f60-bbc8-f122ee6d61d7","revision_id":"","url":"https:\/\/doi.org\/10.7923\/41FB-MC86","description":"","format":"html","state":"Active","revision_timestamp":"Thu, 08\/31\/2023 - 13:29","name":"G2PMiner v0.1.0 Data and Code","mimetype":"html","size":"","created":"Wed, 03\/02\/2022 - 14:44","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed Thu, 08\/31\/2023 - 13:29"},{"id":"1e1a0a08-6c9d-4eeb-bbe2-1c13ae7bc7da","revision_id":"","url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/41fb-mc86.xml","description":"","format":"xml","state":"Active","revision_timestamp":"Mon, 10\/10\/2022 - 14:57","name":"Metadata Access | G2PMineR","mimetype":"text\/xml","size":"4.89 KB","created":"Mon, 10\/10\/2022 - 14:56","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed Mon, 10\/10\/2022 - 14:57"}],"tags":[{"id":"894c23dc-0fe9-49c8-841c-051424e70b40","vocabulary_id":"2","name":"bioinformatics"},{"id":"4ff8f12f-597f-460d-98ea-6650f2124e30","vocabulary_id":"2","name":"environmental change"},{"id":"bb2d577f-162f-43d8-bcc6-83dadb094c0a","vocabulary_id":"2","name":"epigenetics"},{"id":"87ac0d6d-729d-48c5-9f37-a8a40f41001c","vocabulary_id":"2","name":"gene\/genome\/genotype-environment interaction (GxE)"},{"id":"5ae05940-dfb2-465d-b0c6-80250a5613c9","vocabulary_id":"2","name":"genome to phenome"},{"id":"9d10045c-9469-4162-99d1-4a4bf8a3c1f0","vocabulary_id":"2","name":"genomics"},{"id":"e0e801c8-e070-408e-b5ea-bc7776de05d1","vocabulary_id":"2","name":"genotype"},{"id":"5d1e8cc3-2f54-4dee-bb70-74812656aad4","vocabulary_id":"2","name":"G2PMineR"},{"id":"daabf80f-1c33-499f-a710-ec44b020266d","vocabulary_id":"2","name":"G2P"},{"id":"3c778575-18fc-42e4-83de-180930cc02c1","vocabulary_id":"2","name":"literature mining"},{"id":"ca885e7d-84e6-4ca0-b20b-42859bf5920f","vocabulary_id":"2","name":"literature review"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates. Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity. \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]} Error | RCDS Data Repository

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