{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"37bdbf18-c36d-4a61-8cd5-c82bc7443622","name":"annotation-data-utilizing-comparative-approach-assess-genome-evolution-during-diploidization","title":"Annotation data from: Utilizing a comparative approach to assess genome evolution during diploidization in Artemisia tridentata (Asteraceae), a keystone species of western North America","author":"Anthony E. Melton, Stephen J. Novak, Sven Buerki","author_email":"svenbuerki@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","license_title":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/","notes":"\u003Cp\u003ESupporting dataset for genome assembly data found within NCBI BioProjects PRJNA1032953 (UTT2), PRJNA722258 (IDT2) and PRJNA795150 (IDT3-Reference Genome). Fasta assembly data used in the EDTA analysis to generate subsequent output files are available from the NCBI Genome database and raw sequence data are available from the NCBI SRA database. Each input fasta contains the nine pseudo-chromosomes described in \u003Ca href=\u0022https:\/\/doi.org\/10.1093\/g3journal\/jkac122\u0022\u003EMelton et al. 2022\u003C\/a\u003E. Reads from each sample were mapped to the nine pseudo-chromosomes and used to call a consensus sequence. The EDTA analysis provides several outputs, listed below. The primary file of interest is the \u0022SAMPLE_consensus.fasta.mod.EDTA.TEanno.gff3\u0022 file. This file was used as inputs for comparisons of TE content across the three genomes.\u003C\/p\u003E\n\u003Cp\u003EPlease visit \u003Ca href=\u0022https:\/\/github.com\/oushujun\/EDTA\u0022\u003Ehttps:\/\/github.com\/oushujun\/EDTA\u003C\/a\u003E for more information about the EDTA pipeline.\u003C\/p\u003E\n\u003Cp\u003EFILES:\u003Cbr \/\u003E\nSAMPLE_consensus.fasta.mod.EDTA.TEanno.gff3 == Whole-genome TE annotation\u003Cbr \/\u003E\nSAMPLE_consensus.fasta.mod.EDTA.TEanno.sum == Summary of whole-genome TE annotation\u003Cbr \/\u003E\nSAMPLE_consensus.fasta.mod.EDTA.TElib.fa == A non-redundant TE library\u003Cbr \/\u003E\nSAMPLE_consensus.fasta.mod.MAKER.masked == Low-threshold TE masking\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EData Use\u003C\/strong\u003E\u003Cbr \/\u003E\n\u003Cem\u003ELicense\u003C\/em\u003E:\u003Cbr \/\u003E\nCreative Commons Attribution International 4.0 (\u003Ca href=\u0022https:\/\/creativecommons.org\/licenses\/by\/4.0\/legalcode\u0022\u003ECC-BY 4.0\u003C\/a\u003E)\u003Cbr \/\u003E\n\u003Cem\u003ERecommended Citation\u003C\/em\u003E:\u003Cbr \/\u003E\nMelton AE, Novak SJ, Buerki B. 2023. Annotation data from: Utilizing a comparative approach to assess genome evolution during diploidization in Artemisia tridentata (Asteraceae), a keystone species of western North America [Data set]. University of Idaho. \u003Ca href=\u0022https:\/\/doi.org\/10.7923\/hysd-x388\u0022\u003Ehttps:\/\/doi.org\/10.7923\/hysd-x388\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: OIA-1757324\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/annotation-data-utilizing-comparative-approach-assess-genome-evolution-during-diploidization","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Wed, 11\/29\/2023 - 15:19","metadata_created":"Tue, 11\/07\/2023 - 12:11","metadata_modified":"Wed, 11\/29\/2023 - 15:19","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"7862adc3-72e2-4bb3-b043-523efb134060","revision_id":"","url":"https:\/\/www.northwestknowledge.net\/data\/37bdbf18-c36d-4a61-8cd5-c82bc7443622","description":"","format":"WAF","state":"Active","revision_timestamp":"Tue, 11\/07\/2023 - 12:55","name":"Data Access | Annotation data from: Utilizing a comparative approach to assess genome evolution during diploidization in Artemisia tridentata (Asteraceae) [file explorer]","mimetype":"WAF","size":"","created":"Tue, 11\/07\/2023 - 12:54","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Tue, 11\/07\/2023 - 12:55"},{"id":"b0e2cd36-c534-45dd-97bb-eb04cd7dd937","revision_id":"","url":"https:\/\/www.northwestknowledge.net\/data\/37bdbf18-c36d-4a61-8cd5-c82bc7443622\/readme.txt","description":"","format":"txt","state":"Active","revision_timestamp":"Tue, 11\/07\/2023 - 12:56","name":"Metadata Access | Annotation data from: Utilizing a comparative approach to assess genome evolution during diploidization in Artemisia tridentata (Asteraceae) [readme.txt]","mimetype":"txt","size":"","created":"Tue, 11\/07\/2023 - 12:56","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Tue, 11\/07\/2023 - 12:56"},{"id":"57cf18e8-a2f6-4ad4-9b07-3a8aa6e16413","revision_id":"","url":"https:\/\/www.northwestknowledge.net\/data\/37bdbf18-c36d-4a61-8cd5-c82bc7443622\/hysd-x388.xml","description":"","format":"xml","state":"Active","revision_timestamp":"Tue, 11\/07\/2023 - 12:57","name":"Metadata Access | Annotation data from: Utilizing a comparative approach to assess genome evolution during diploidization in Artemisia tridentata (Asteraceae) [DataCite XML]","mimetype":"xml","size":"","created":"Tue, 11\/07\/2023 - 12:57","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Tue, 11\/07\/2023 - 12:57"},{"id":"45c5e5dd-c49f-418d-98a3-a324f74abba6","revision_id":"","url":"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA1032953","description":"","format":"data","state":"Active","revision_timestamp":"Wed, 11\/29\/2023 - 14:09","name":"Ancillary sequencing and assembly data (UTT2) via NCBI: BioProject PRJNA1032953","mimetype":"data","size":"","created":"Tue, 11\/07\/2023 - 12:59","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Wed, 11\/29\/2023 - 14:09"},{"id":"27232e6e-7b25-4629-9dff-497e113049c5","revision_id":"","url":"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/PRJNA795150","description":"","format":"data","state":"Active","revision_timestamp":"Tue, 11\/07\/2023 - 13:03","name":"Ancillary sequencing and assembly data (IDT3) via NCBI: BioProject PRJNA795150","mimetype":"data","size":"","created":"Tue, 11\/07\/2023 - 13:00","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Tue, 11\/07\/2023 - 13:03"},{"id":"9fb17f84-8779-49f2-b96f-92e42104e0e9","revision_id":"","url":"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/722258","description":"","format":"data","state":"Active","revision_timestamp":"Wed, 11\/29\/2023 - 14:10","name":"Ancillary sequencing and assembly data (IDT2) via NCBI: BioProject PRJNA722258","mimetype":"data","size":"","created":"Wed, 11\/29\/2023 - 14:10","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed  Wed, 11\/29\/2023 - 14:10"}],"tags":[{"id":"bfd62175-0785-4c6b-ad66-b98ab6501123","vocabulary_id":"2","name":"Artemisia tridentata (sagebrush)"},{"id":"f71a87fc-12aa-4a8d-a43d-cfdb02591790","vocabulary_id":"2","name":"annotations"},{"id":"b5b06fd8-9a9e-44ec-a3b3-348b5f20a47c","vocabulary_id":"2","name":"gff"},{"id":"542df88f-4cfb-441c-94d7-d73aa882f974","vocabulary_id":"2","name":"sequence assembly"},{"id":"9d10045c-9469-4162-99d1-4a4bf8a3c1f0","vocabulary_id":"2","name":"genomics"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates.  Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity.  \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]}<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
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