{"help":"Return the metadata of a dataset (package) and its resources. :param id: the id or name of the dataset :type id: string","success":true,"result":[{"id":"199a3efa-4329-46dc-92ef-77d9e7fe98d2","name":"draft-genome-artemisia-tridentata-subsp-tridentata","title":"Draft Genome for Artemisia tridentata subsp. tridentata","author":"Anthony E. Melton, James Beck, Stephanie J. Galla, Jerry Jenkins, Lori Handley, Min Kim, Jane Grimwood, Jeremy Schmutz, Bryce A. Richardson, Marcelo Serpe, Stephen Novak and Sven Buerki","author_email":"svenbuerki@boisestate.edu","maintainer":"RCDS Data Repository","maintainer_email":"rcds-web@uidaho.edu","notes":"\u003Cp\u003EClimate change presents distinct ecological and physiological challenges to plants as extreme climate events become more common. Understanding how species have adapted to drought, especially ecologically important non-model organisms, will be crucial to elucidate potential biological pathways for drought adaptation and inform conservation strategies. To aid in genome-to-phenome research, a draft genome was assembled for a diploid individual of Artemisia tridentata subsp. tridentata, a threatened keystone shrub in western North America. While this taxon has few genetic resources available and genetic\/genomics work has proven difficult due to genetic heterozygosity in the past, a draft genome was successfully assembled. Aquaporin (AQP) genes and their promoter sequences were mined from the draft genome to predict mechanisms regulating gene expression and generate hypotheses on key genes underpinning drought response. Fifty-one AQP genes were fully assembled within the draft genome. Promoter and phylogenetic analyses revealed putative duplicates of A. tridentata subsp. tridentata AQPs which have experienced differentiation in promoter elements, potentially supporting novel biological pathways. Comparison with non-drought-tolerant congener supports enrichments of AQP genes in this taxon during adaptation to drought-stress. Differentiation of promoter elements revealed that paralogues of some genes have evolved to function in different pathways, highlighting these genes as potential candidates for future research and providing critical hypotheses for future genome-to-phenome work.\u003C\/p\u003E\n\u003Cp\u003EThe data from this project have been submitted to NCBI and are available from the following accession numbers:\u003C\/p\u003E\n\u003Cp\u003EBioProject: \u003Ca href=\u0022https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/722258\u0022\u003EPRJNA722258\u003C\/a\u003E\u003Cbr \/\u003E\nBioSample: SAMN18747788\u003Cbr \/\u003E\nDraft genome assembly: JAHAUY000000000\u003Cbr \/\u003E\nSRA raw read submissions: SRR14309371, SRR14309372, and SRR14309373\u003Cbr \/\u003E\nCode utilized for analysis within the associated manuscript can be found in \u003Ca href=\u0022https:\/\/doi.org\/10.7923\/0X95-J046\u0022\u003ERelease v0.0.1\u003C\/a\u003E of the \u003Ca href=\u0022https:\/\/github.com\/aemelton\/DraftGenomeMineR\u0022\u003EDraftGenomeMineR GitRepo\u003C\/a\u003E.\u003C\/p\u003E\n\u003Cp\u003ESupplementary documents, including scaffolds and alignment fasta, are openly accessible as \u0022Supporting Information\u0022 within the Ecology and Evolution open access peer reviewed manuscript article. \u003Ca href=\u0022https:\/\/doi.org\/10.1002\/ece3.8245\u0022\u003Ehttps:\/\/doi.org\/10.1002\/ece3.8245\u003C\/a\u003E\u003C\/p\u003E\n\u003Cp\u003E\u003Cstrong\u003EFunding\u003C\/strong\u003E\u003Cbr \/\u003E\nUS National Science Foundation and Idaho EPSCoR: \u003Ca href=\u0022https:\/\/www.nsf.gov\/awardsearch\/showAward?AWD_ID=1757324\u0022\u003EOIA-1757324\u003C\/a\u003E\u003C\/p\u003E\n","url":"https:\/\/data.nkn.uidaho.edu\/dataset\/draft-genome-artemisia-tridentata-subsp-tridentata","state":"Active","log_message":"Edited by awchild.","private":true,"revision_timestamp":"Fri, 08\/11\/2023 - 14:41","metadata_created":"Tue, 03\/08\/2022 - 14:40","metadata_modified":"Fri, 08\/11\/2023 - 14:41","creator_user_id":"6cc16f2c-77c2-4d12-ac06-56bbb86b535b","type":"Dataset","resources":[{"id":"4640c371-9660-4ca5-b987-eb8b6b07bf93","revision_id":"","url":"https:\/\/www.ncbi.nlm.nih.gov\/bioproject\/722258","description":"","format":"html","state":"Active","revision_timestamp":"Fri, 08\/11\/2023 - 12:34","name":"Data Access via NCBI BioProject PRJNA722258 | Draft Genome for Artemisia tridentata subsp. tridentata","mimetype":"html","size":"","created":"Tue, 03\/08\/2022 - 14:41","resource_group_id":"bff301ea-b742-427b-954e-e6a326c2ea45","last_modified":"Date changed Fri, 08\/11\/2023 - 12:34"}],"tags":[{"id":"5f859265-7d19-47f5-a15e-0e22846d565a","vocabulary_id":"2","name":"adaptation"},{"id":"bfd62175-0785-4c6b-ad66-b98ab6501123","vocabulary_id":"2","name":"Artemisia tridentata (sagebrush)"},{"id":"3c4b7b04-c8c8-46c4-bc38-4a5ad5c6e57a","vocabulary_id":"2","name":"climate change"},{"id":"d7f46c33-19b1-4acb-9a17-c37700ec2e04","vocabulary_id":"2","name":"drought"},{"id":"4ff8f12f-597f-460d-98ea-6650f2124e30","vocabulary_id":"2","name":"environmental change"},{"id":"5ae05940-dfb2-465d-b0c6-80250a5613c9","vocabulary_id":"2","name":"genome to phenome"},{"id":"6d2f4f5c-a6d7-4e1a-9659-6bc5a72e4bb6","vocabulary_id":"2","name":"aquaporins"},{"id":"676cf28f-3517-4dc4-9c17-96b2cd742531","vocabulary_id":"2","name":"drought stress"},{"id":"8ff2ba5e-9187-4c8a-8328-a183ec7f49b1","vocabulary_id":"2","name":"genome mining"}],"groups":[{"description":"\u003Cp\u003EBoise State University is a Carnegie-classified doctoral research university and our students have opportunities to work with talented and accomplished faculty on research, even as undergraduates. Our students go into the workforce better prepared, with expertise outside of their major by taking advantage of opportunities such as certificates in business anthropology, entrepreneurship, or cybersecurity. \u003C\/p\u003E\n\u003Cp\u003ELearn more at \u003Ca href=\u0022https:\/\/www.boisestate.edu\/\u0022\u003Ehttps:\/\/www.boisestate.edu\/\u003C\/a\u003E\u003C\/p\u003E\n","id":"bff301ea-b742-427b-954e-e6a326c2ea45","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/bsu_logo.jpg","title":"Boise State University","name":"group\/boise-state-university"},{"description":"\u003Cp\u003EThe primary objective of Idaho EPSCoR is to stimulate research in niche areas that can become fully competitive in the disciplinary and multidisciplinary research programs of the National Science Foundation and other relevant agencies. Idaho EPSCoR provides support for sustainable increases in Research and Development capacity and advances science and engineering capabilities within the state. \u003C\/p\u003E\n\u003Cp\u003EVisit them at \u003Ca href=\u0022https:\/\/www.idahoepscor.org\u0022\u003Ehttps:\/\/www.idahoepscor.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"e696b239-9ecb-412e-b032-03a75b2b9fd6","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/Idaho_epscor_logo_no_white_background.png","title":"Idaho EPSCoR","name":"group\/idaho-epscor"},{"description":"\u003Cp\u003EGEM3 is an NSF EPSCoR research program seeking to understand how genetic diversity and phenotypic plasticity affect species response to environmental change, shaping both population response and adaptive capacity.\u003C\/p\u003E\n\u003Cp\u003EVisit them at: \u003Ca href=\u0022https:\/\/www.idahogem3.org\u0022\u003Ehttps:\/\/www.idahogem3.org\u003C\/a\u003E\u003C\/p\u003E\n","id":"1812a312-11a4-492d-960b-9a78b4abfe0c","image_display_url":"https:\/\/data.nkn.uidaho.edu\/sites\/default\/files\/GEM3_nov5_logo.png","title":"EPSCoR GEM3","name":"group\/epscor-gem3"}]}]} Error | RCDS Data Repository

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